Repbase Reports |
|---|
| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 10 |
ATCOPIA83_I |
|||
|---|---|---|---|
Internal region of the ATCOPIA83 copia-like LTR-retrotransposon. |
|||
|
Submitted: 31-Mar-2001 |
Accepted: 31-Mar-2001 |
||
|
Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA83 family; ATCOPIA83LTR; ATCOPIA83_I |
|||
|
Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Internal portion of the ATCOPIA83 copia-like LTR-retrotransposon. |
|||
|
Journal: Repbase Reports 1:(3) p. 10 (2001) |
|||
Abstract: ATCOPIA83_I is an internal region of the ATCOPIA83 copia-like endogenous retrovirus flanked by the 99% identical ATCOPIA83LTR long terminal repeats, and a 5-bp target-site duplication (AGATA). ATCOPIA83 forms a separate family of copia-like retroviruses present in the A. thaliana genome. There are two nearly identical copies of ATCOPIA83 found on chromosome 5. However one of them is a result of a ~14-kb duplication. ATCOPIA83 is most close to ATCOPIA26. There is a 74% identity between LTRs and internal portions of these two retroelements. ATCOPIA83_I encodes well preserved remnants of the ~1500-aa ATCOPIA83p copia-like polyprotein. ATCOPIA83p (nucleotides at positions 982 and 983 form a false frame shift; we have deleted them to produce this polyprotein): MSTELALTTSSSTTTQPRRTISPYDLTSGDNPGTLISKPLLRGPNYDEWATNLRLALKARKKFGFADGTI PQPDETNPDFDDWIANNALVVSWMKLTIHESLATSMSHLDDSHDMWTHIQKRFGVKNGQRIQRLKTELAT CRQKGTPIETYYGKLSQLWRSLADYQQAKTMEEVRKEREEDKLHQFLMGLDESMYGAVKSALLSRVPLPS LEEAYNTLTQDEESKSLSRLHDERNDGVSFAVQTTPRTRSLTKNKDSAIVCSHCGRLGHLAENCFKLVGY PPWQEKMRRNATSSSRNQSASMGRGSSVVPATSFKGKQSFGRGASANHVANIGESTTAATSSMSGSQLTE ADRVGISGLNDEQWKQLRQMLKERNFNSTNTKSSKFFLESWIIDSGATNHMTGTLEFLRDVCDMPPIMIK LPDGRLTTSTKHGRVYLGSSLDLQEVFFVDGLHCHLISVSQLTRAKSCVFQITDKVCIIQDRITLTLIGA GKQQNGLYFFRGTETVASMTRMDSSSQLWHCRLGHPSSKVLKLLSFSDSTGHAFDSKTCEICIKAKQTRD PFPLSNNKTSSPFEMVHCDLWGPYRTTSICGSNYFLTLVDNYTRAVWLYLLPSKQTAPMHLKNFISLVER QFSTKIKTIRSDNGTEFVCLSSFFVDHGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFW SYCALTAAYLINRTPTPLLQGKTPFELLYNRPPPVNHIRVFGCICYVHNQKHGGDKFESRSNKSIFLGYP FAKKGWRVYNFETGVISVSRDVVFRETEFPFPASVFDSTPDSQLSPSNADQSFFLPSELQAPTPVSITTT LELTQSSSSTNLNDDNFHIPSDESSSVNEMSDNEDLNSPTTNESSPFLSPASPSLPLSPASLSLPLSPAA PSPSLPKIAEPEPEPELLGKGKRKKTQPVRLADYATTLLHQPHPSVTPYPLDNYVSSSQFSAAYQAYVFA ISLGIEPKSYKEAILDENWRCAVSDEIVSLENLGTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKAR LVVLGNKQTEGIDYSETFAPVAKMVTVRAFLQQVASLDWEVHQMDVHNAFLHGDLDEEVYIKFPPGFGSD DNRKVCRLRKALYGLKQAPRCWFAKLTTALNDYGFIQDISDYSLFTMERNGIRLHILVYVDDLIITGSSL DVITKFKGYLSSCFYMKDLGILRYFLGIEVARSPAGIYLCQRKYAIDIITETGLLGVWPASHPLEQNHKL ALAFGDTISDPSRYRRLVGRLIYLGTTRPELSYAIHMLSQFMSDPKADHMEAALRVVRYLKSSPGQGILL RSNTPLVLIGWCDSGFDSCPITQRSLTGWFIQLGGSPISWKTKKHDVVSRSSAEAEYRAMADTVSELLWL RALLPALGISCNEPIMLYSDSLSAISLAANPVYHARTKHVGRDVHFVRDEIIRGTIATKHVSTTSQLADI MTKALGRREFDAFLLKLGICNLHTPACGGGGGG
|
|||
|
Derived: Positions 14350 9708 Accession No AB010694 GenBank (rel. 124.0) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||