Repbase Reports |
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| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 8 |
ATCOPIA82_I |
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Internal region of the ATCOPIA82 copia-like LTR-retrotransposon. |
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Submitted: 31-Mar-2001 |
Accepted: 31-Mar-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA82 family; ATCOPIA82LTR; ATCOPIA82_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA82 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(3) p. 8 (2001) |
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Abstract: ATCOPIA82_I is an internal region of the ATCOPIA82 copia-like endogenous retrovirus flanked by the 98% identical ATCOPIA82LTR long terminal repeats, and a 5-bp target-site duplication (TTGGT). ATCOPIA82 forms a separate family of copia-like retroviruses present in the A. thaliana genome. ATCOPIA82_I encodes (positions 14-4279) well preserved remnants of the ~1422-aa ATCOPIA82p copia-like polyprotein. A false stop codons at position 1756 corresponds to H (based on polyproteins most close to ATCOPIA82p). ATCOPIA82p: MDSQIQLYSHPVIHISNYVTVQLTERNYLLWKTQFESFLSGQNLLGFVNGAIKPPPAVNTLTQINGLTTE VQNPDYQAWQRSDQVVRAWLLGSLSEDILREVVHTITAQEVWTALAQHFNKVSSSRLFKLQRKLQTIEKL DKSMEDYVREIKRICEQLASIGNPVSQKMKIFAALHDLGRDYEPIKTSIEGSMDLHPPPTFESVIPRLTG FADRMAGYNAGNEVSPHLAFNITTTNGSHYYSSQGRGNGKPGNNNKGRLNFTTKGRGFHQQISSGSSGGD RIICQICGKPGHPALKCWHRFNNSYQHEELPSALAALRITDVTETAGHDWFTDSAATAHVTNSTNRLQQS QPYSGSDAVMVGNGEFLPITHTGSTSLQSTSGNLPLTDVLVCPDINKSLISVSKLTSDYPCCVEFDCDTV RITDKATKRLLTMGHHNKGLYMLKNHSPLEVYYSSRQQAASDAVWHRRLGHPNAQILQHLSTTKAISVNK NTKMVCEACQLGKSLKLPFSASSFVASRPLQRIHCDLWGPSPIMSVQGFRYYAVLIDNYSRFSWFYPLKL KSDFALIFPVFQAMVENQFQ*KIGTFQCDGGGEFISKDFIAHLQKHGIQQLMSCPHTPQQNGLAERKHRH IIELGLSMIFQSSMPQKYWVEAFYTANFLINLLPSSVLEKKCSPYEVLMGKPPNYTSLRVFGCACYPTLR DYATTKFDPRSLKCVFLGYNDKYKGYRCLLPTTGRVYISRHVIFDESLFPFSSMAYIHLQPANVTPLMSA WLKGCSVQEQNQTGTSTENQDHNDQNSVPSGRVLLREEESTGCTAGFDHVPIGNSSSSSTQQITTSEDSP IIQPLPSTTEQSTQNQSSQSASSNSESSQVQTAQPSQSTHPMTTRLKDGIRKPNPRYGLHTQRVSYPEPK TVTAALKDEGWTDAMHEEMDNCSEAKTWSLVPYTPNMHVLGSKWVFRTKLNADGSLDKLKARLVAKGFNQ EEGIDYLETYSLVVRTPTVRSVLHLATIMQWDIKQMDVKNAFLHGDLTETVYMMQPAGFVEKSKPDHVCL LHKSIYGLKQFPRAWFDKFSTYLIEFGFECSKPDPSLFVYIKNKSIILLLLYVDDMIITGNSSDAMSKLL DSLNTEFRMKDMGRLHYFLGIQVQFHSEGMFLSQQKYAEDLLAVAVMSDCAPMPTHLPLQLTAIPAQDEI FDNPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHAPTVSDFNLLKRILRYIKGTITMGISFNKNTYCR LRAYCDSDYGNCIDSRRSIGGYCTFLGTNIISWSSQKQDSVSKSSTEAEYRTLSDTASEVTWLGSVLKEL GIPLLDTPEIYCDNLSSVYLSANPAFHKRSKHFQLHYHYVRERVALGALIVKHIPGHQQIADIFTKSLPI KPFCDLRYKLGVDVPPTPSLRG
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Derived: Positions 60791 56513 Accession No AP001298 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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