Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 39 |
ATENSPM1A |
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ATENSPM1A, an autonomous DNA transposon - a consensus. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: autonomous DNA transposon; En/Spm superfamily; 3-bp TIR; transposase; ATENSPM1A |
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Source: consensus |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Dilleniidae; Capparales; Brassicaceae |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: ATENSPM1A, an autonomous DNA transposon - a consensus. |
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Journal: Repbase Reports 1:(2) p. 39 (2001) |
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Abstract: ATENSPM1A is an autonomous DNA transposon from the En/Spm superfamily. Its individual copies are ~98% identical to the consensus sequence. Five copies of ATENSPM1A are present in the genome. They are bordered by 3 bp-long target site duplications. ATENSPM1A has 29-bp TIRs. There is a 84% identity between the ATENSPM1A and ATENSPM1 consensus sequences. ATENSPM1A encodes two proteins: ATENSPM1A1p (CDS: 1434-947 and 231-96) and ATENSPM1A2p (CDS: 1584-1855, 2073-2199, 2277-2567, 2664-2885 and 3402-3776). Function and classification of ATENSPM1A1p is unknown. ATENSPM1A2p is a transposase. ATENSPM1A1p: MKKKLDRREAVRSEKKTLPWRQKRSSRGCCWRRRVATAAGEEESRRLLEKKSRDGCWRRR DATEKKKKLDRTVEVGMERRSYIGEEDVTLEKKQIDSRLKLEKKSCGGCWRIRDAAEKKK RGGDVIRSKKKRGGGEENRSEKKRSRRRGKQIGEEENRRKKIRVKICDVSAWDLRRIISF LRNHRTSLANLRGSLPSQVLRRNCYARA ATENSPM1A2p: MPSSENTYARYRSQQRDPLHVNSPVSAGNISGVQGSRHPPSPPTPTTQPSVNHSDSQAER LNNLTLEELLDSPGRAGLTRLDPKRPPGTLWFDDDAAVAATVRSIFERDFKEPHANWSQT SKATIDRWYETFAQVYNWDRSINKRVRVEFEAKLKSRMTDQVSRWKGNWKEKGDEAKPKW IDPDVWKGLVLFWQDPKSEKRVTTAEMLGIMIRMAKASINTVQARPHTKLCEKTGEKTPD FLELLDETHRKADGSFIDGKSEEIYKQVTSRIEEEESHMGSGDNPESTGSGGLSVHAKNK IFTEVAPRKKGRIYGVGSLQFEASSAHSGPTLPSDDPVILSAKLAAAEACIQNQAEKINS FDILFDYLAEKDPALAAILRRGSSTQTRPVSANEPPVATAPEQQANEETAAAAALANLAT GSSPSSVF
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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