Repbase Reports |
|---|
| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 36 |
ATCOPIA77_I |
|||
|---|---|---|---|
Internal region of ATCOPIA77 copia-like LTR-retrotransposon. |
|||
|
Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
||
|
Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA77LTR; ATCOPIA77_I |
|||
|
Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Internal region of ATCOPIA77 copia-like LTR-retrotransposon. |
|||
|
Journal: Repbase Reports 1:(2) p. 36 (2001) |
|||
Abstract: ATCOPIA77_I is an internal region of the ATCOPIA77 copia-like endogenous retrovirus flanked by the 97% identical ATCOPIA77LTR long terminal repeats, and a 5-bp target-site duplication (CTTTG). ATCOPIA77_I's CDS, which encodes remnants of the ATCOPIA77p copia-like polyprotein, is slightly damaged by false stop codons and other mutations. ATENSPM1A transposon is inserted into ATCOPIA77_I and flanked by the CTA target site duplication. ATENSPM1A and the CTA repeat are removed from the ATCOPIA77_I sequence described here.
|
|||
|
Derived: beg: Positions 5552 1 Accession No AC006841 GenBank (rel. 124.0) end: Positions 16697 20193 Accession No AC007210 GenBank (rel. 124.0) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||