Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 20 |
ATCOPIA66_I |
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Internal region of ATCOPIA66 copia-like LTR-retrotransposon - a consensus sequence. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA66LTR; ATCOPIA66_I |
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Source: consensus |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA66 copia-like LTR-retrotransposon - a consensus sequence. |
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Journal: Repbase Reports 1:(2) p. 20 (2001) |
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Abstract: ATCOPIA66_I is an internal region of the ATCOPIA66 copia-like endogenous retrovirus flanked by the 1% divergent ATCOPIA66LTR long terminal repeats, and by a 5-bp target-site duplication. There are two copies of ATCOPIA66 present in the genome, they are 99% and 98% identical to the consensus sequence. ATCOPIA66's closest relative is 93% identical to the consensus sequence (ATCOPIA66A: AC007188, positions 36655-41067). ATCOPIA66_I encodes the 1372-aa copia-like polyprotein ATCOPIA66p. ATCOPIA66p: MAMTSEANLNSGLKASFQVFNENSDFSLWKTRMKAHLGLAGLKGVIDDFTLTKVVPLTKSEGKKVEEGDD DGSESSQTKEVPDLVKMEKSEQAMNVIIAHVGDVVLRKIDHCKSAAEMWETLNKLYMETSLPNRIYVQLK FYSFKMNDTMSINENVNEFLKIVAELSSLEIVVGEEVRAILFLNGLSSRYSQLKHTLKYGNKALSLQDVI SSAKSLERELNESLDLERSSSTVLYTTERGRPLVRNNQNNQNNQKGGQGRGRSRSNSKTRVTCWFCKKEG HVKKDCFARKKKMETEGPGEAGVIIEKLVFSEALSVNDQMVKDLWVLDSGCTSHMTSRRDWFCDFQENGS TTILLGDDHSVESQGQGSIRVNTHGGSIKILNNVKYVPNLRRNLISTGTLDKLGYQHEGGAGKVRYFKNQ VTALCGSLVNGLYILDGETVMTESCAAVDSQSKTALWHSRLGHMSLNNLKVLAGKGLLNGKEIKDLDFCE HCVMGMSKRLSFNVGKHDVVEALSYVHADLWGSSNLSPSLSGKQYFLSIIDDKTRKVWLYFLRTKDETFD KFCEWKELVENQVDRKVKCLRTNNGLEFCNTKFDRYCKTHGIERHRTCVYTPQQNGVAERMNRTIMEKVR CLLNESGLDESFWAEAAATAAYIINRSPASAIDHNVPEELWLNRKPGYKHLKRFGSIAYVHHDQGKLKPR ALKGVFLGYPAGTKGYKIWLLDERKCVISRNVIFREDMVYKDLNKDVNDAVAEDAEASTSNSDVISELVK KRVSSKQGGVTTELVEVSESESEEDSEEPAETAVTQSPEPSGLTNYQLARDRTRRQIVAPVKMKDYSQFA FALMTYEILNVEEEPQCLHDAQKDENWELWNGAIGEEMDSLTKNGTWELVDRPKDRKVISCRWLFKIKVG IPGVESKRYKARLVARGFSQKKGIDYQEIFALVVKHTSIRGLMFVVVNLDLELEHMDVKTAFLHGELEEE LYMEQPEGVVSVGNEDKVFLLKKSLYGLKQAPRQWNKRFNKFMTDEKFQRSDHDQCVYVKTMNNGELVYL LLYVDDMLIAAKNMSEVNKVKKRLSSEFEMKDMGPANKILGIEITRDRVNGVLCLSQAGYLKKVLKRFNM SNCKSALTPIGTHFKLASVQDDSECIDTVKTPYSSAVGSVMYAMISTRPDLAYAIGLVSRFMSKPGSVHW EAVKWLLRYIKGSHDLSLVYTKGKDLSVIGYCDSDHGGDLDRKRFTSGYVFTVGGNTISWKSCLQSVVAL SSTEAEFIALTEAVKEAIWVKGLLEDLGFQQDKAQVWSDSQSAICLSRNSVFHERTKHMARKRSFLSDII EEGNIEVVKIHTSINPADMLTKCIPVKSFDSALDTLKLIEWK
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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