Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 18 |
ATCOPIA65_I |
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Internal region of ATCOPIA65 copia-like LTR-retrotransposon. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA65LTR; ATCOPIA65_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA65 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(2) p. 18 (2001) |
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Abstract: ATCOPIA65_I is an internal region of the ATCOPIA65 copia-like endogenous retrovirus flanked by the 1% divergent ATCOPIA65LTR long terminal repeats, and by a 5-bp target-site duplication. ATCOPIA65_I encodes well preserved remnants of the 1374-aa copia-like polyprotein ATCOPIA65p. ATCOPIA65p: MSEIVEATSKGKEGGGSASIQCPMLNSVNYTVWTMRMEAVLRVHKLWGTIEPGSADEEKNDMARALLFQS IPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQTLMAEFDKLKMKDSETIDDYVGRISEITTKAA ALGEDIEESKIVKKFLKSLPRKKYIHIVAALEQVLDLKTTTFEDIAGRIKTYEDRVWDDDDSHEDQGKLM CVKTXSQDGKLMYANSDSQGQYEFQDRGRGRGRGRFGRGRGRGYQQRDKSKVTCYRCDRLGHYASDCPDR LLKLIRLQEQKEKEEDDTHEAESLMMHEVVYLNEKNIRPTELESCINNAWYLDNGASNHMTGNRAWFCKL DEMITGKVRFGDDSCINIKGKGSIPFISKGGERKILFDVYYIPDLKSNILSLGQATESGCDIRMREDYLT LHDREGNLLIKAQRSRNRLYKVSLEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSS VPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSIL LKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQQNGVVERR NRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKHKKPNVEHLRVFGCVSYAK VEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSRDVVFDENRSWMWQESSSETDKESGTFTI TLSEFGNNGVTENDISTEPEETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYV LCAEIEAEHLLLAVNDEPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHN SDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELREDV YVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENILVVAV YVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCN TVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILR YLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFM AATEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEV EHVPGVRQKADILTKALGKIKFLEMRELIGVQGVSKEDFKLKRE
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Derived: Positions 13692 17856 Accession No AB025639 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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