Repbase Reports |
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| 2001, Volume 1, Issue 2 |
| February 28, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2 |
ATCOPIA48_I |
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Internal region of ATCOPIA48 copia-like LTR-retrotransposon. |
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Submitted: 28-Feb-2001 |
Accepted: 28-Feb-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; ATCOPIA48LTR; ATCOPIA48_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA48 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(2) p. 2 (2001) |
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Abstract: ATCOPIA48_I is an internal region of the ATCOPIA48 copia-like endogenous retrovirus flanked by the 98% identical ATCOPIA48LTR long terminal repeats, and by the 5-bp target-site duplication (GAAGT). ATCOPIA48_I CDS, which encodes the ATCOPIA48p copia-like polyprotein, is interrupted by a non-LTR retrotransposon inserted recently in the genome. Presumably, the insertion has induced a 2629-bp duplication which flanks the insert. Both the non-LTR retrotransposon and a copy of the 2629-bp direct repeat were removed from the ATCOPIA48_I sequence reported here. ATCOPIA48p: MERRSMELYTVPQLNISNCVTVTLTQQNYILWKSQFESFLSGQGLLGFVTGSISAPSPTIPVPDINGVTT DRPNPEFDVWFKTDKVVKSWLLGSFAEDILSVVVNYVTAHEVWSTLANHFNRATSSRLFELQRRLQTLEK KDKPMQVYLKELQTIYEQLASVGSPVPEKMKIFAALNGLGREYEPIKTSIEGSIDIPPTPKLDEIMPRLN GYDDRLQAYAANSDVSPHLAFNTVQANSVFYTNRGRGQGNRRFGGSRGQGSFSTRGRGFHQXLSYNDSSS NASAERPTCQICGKHGHHALNCWHRFDNSYQLDVLPQALPATQITDITDHSGSEWVTDSAATAHITNSPR HLQQTKSYAGSDSVMVGNGNFLPITHTGSTSIGSTSGKLHLKDVLVCPLITKSLLSVSKVTKDYPCIFEF DCDEVRVRDKETKKLLLQGSNRDGLYVLDEPKLLVFYSSRQVAASDEVWHRRLGHPNPHVLQQLSSTKSI LINKHSKAICEACQSGKSSRLSFSASSFVASRPLERIHCDLWGPSPVMSVQGFRYYVIFIDNYSRYCWFY PLKLKSDFYTIFAKFQALVQNQLQSKISIFQCHGGGEFTSKVFLNHLQEHGIQQYISCPYTPQQNGLAER KHRHITDFGLSMLFQGKVPQKHWVEAFYTTNFLSNLLPHTALTDAKSPFELLNKKKPDYQALRIFGCACF PTLRDYAQHKFDPKSLKCVFLGYNEKYKGYRCLLPTTGRVYISRHVIFDEHSFPFSDTYMHLQPTGVTPL LSAWQQSFMPQTTASSTASATATSPFNAAEIQVSPVITSNNNTGASVLENGSSQLPIQNSSVLSTVASEE SSECTESINLLPIGNSSSSLANRTDNADTSPLQEAATETNSSTVQEAAESTTSSTMQEPASNQSTHPMIT RSKKGITKPNPRYGLLTHKVKYAEPKTVTEALKHPGWTAAMHEEYDNCTEAQTWSLVPYTSDMNVLGSKW VFRTKLNADGSLDKLKARLVAKGFDQEEGIDYLETYSHVVRSATVRMVLHVATVMDWEVKQMDVKNAFLH GDLTETVYMLQPAGFVNKEKPTHVCHLHKALYGLKQAPRAWFDKFSNYLLEFGFNCSIKDPSLFIYLKGN DLILLLLYVDDMVLTGSNSATMIKLLEDLNTQFRMKDLGQMHYFLGTQAXFHENXXCLYTLSGLFLSQQK YAEDLLTIAAMDECSPMPTPLPLQLHKVPHQEELFANPTYFRSLAGKLQYLTLTRPDLQFSVNFVCQKMH QPTVSDYNLLKRILRYVKGTLSMGIHFSKHSDFQLRVYTEKDPAFSLRAYSDSDWGGCKDTRRSTGGYCT FLGTNLISWSSKKQPTVSRSSTEAEYRSLSETAQEMTWICHLLRELGIPLPVTPELYGDNLSSVYLTANP AFHARSKHFEFDYHYVRERVALGSLVVKHIPAHQQIVDIFTKSLPYEAFCNLRFKLGVDLPPTPRLRG
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Derived: Positions 16028 11546 Accession No AL161543 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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