Repbase Reports |
|---|
| 2001, Volume 1, Issue 1 |
| January 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 8 |
ATCOPIA49_I |
|||
|---|---|---|---|
Internal region of ATCOPIA49 copia-like LTR-retrotransposon - a consensus sequence. |
|||
|
Submitted: 31-Jan-2001 |
Accepted: 31-Jan-2001 |
||
|
Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; ATCOPIA49LTR; ATCOPIA49_I |
|||
|
Source: consensus |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Internal region of ATCOPIA49 copia-like LTR-retrotransposon - a consensus sequence. |
|||
|
Journal: Repbase Reports 1:(1) p.8 (2001) |
|||
Abstract: ATCOPIA49_I is a consensus sequence of an internal portion of the ATCOPIA49 copia-like endogenous retrovirus; there are 3 copies of ATCOPIA49_I present in the genome, they are flanked by ~2% divergent ATCOPIA47LTR, and by 5 bp-long target-site duplications. These copies are 1% divergent from the consensus sequence. ATCOPIA49_I encodes the 1361-aa ATCOPIA49p copia-like polyprotein. ATCOPIA49p: MAGTPIAIFDGSGDFSLWKTRIMAHLSVIGLKDVVIGTSSPPLTAEEEEDPEKKKKRDADDAARLERCDK AKNVIFLNVADKVLRKIELCQTAAEAWGTLDRLFMIRSLPHRVFTQLSFYTFKMQENKKIDENIDDFLKI VADLNHLQIEVTDEVQAILLLSSLPSRYDGLVETMKYSNSREKLRLDDVMVAARDKERELSQSNRSVSEG NFARGRQEGSSNNNQRNKGKGRSRSKSRDGKRVCWICGKEGHFKKQCFKWLERNKDKGSGSSSDKGEASI AKAEYDPAMVLMAEEENLFVSGNTADEWVLDTGCSFHMTPRRDWFSDFREVKSGYVKMGNDSLSQVKGIG NIRIKNSDGTQITLTEVRYMPTMSRNLISLGTLEDKGCWFKSQDGILKVVKGCSTVLKGQKRETLYILLG EAEIAESNVSEKSKDETVLWHSRLGHMSQKGMEILVKKGCLNRKVIHELKFCEDCIYGKNHRVSFPSAQH VTKEKLAYIHSDLWGSPHNPASLGNCQYFISFIDDYSRKVWIYFLKKKDEAFEKFVEWKKMVENQSDKKV KKLRTDNGLEYCNHYFEKFCKEEGIVRHKTVAYTPQQNGVAERLNRTIMDKVRSMLSESGMEKRFWAEAA ATAVYLINRSPSTATNFELPEERWTGALPDMSSLRRFGCLAYVHADQGKLNPRAKKGIFTSYPEGVKGYK VWLLEEKKCVISRNVIFREEMMYKDLKTDSQNSFYEEVMENIGEGSNQLISNITDQSITEQESVEQGGVT EEQIVNEQNQVQTETHEEEGSSSDNSTEEVDLSNYLLVRDREKRTVKLNRRYNESNMVGFAYNTEDGGKS EPKTYQEALSDQDWELWNGAMKEEISSMGKNHTWDLVDKPVNAKIIGCRWVFTRKAGIPGVEAPRFKARL VAKGFTQKEGVDYNEIFSPVVKHVSIRFMLSMVAQFDMELHQMDVKTAFLHGFLDEEILMAQPEGFEDKK YPEKVCLLKRSLYGLKQSPRQWNLRFDEFMKSIDFTRSAYDSCVYLKQQSDKSYVYLLLYVDDMLIAAKE KSSIMELKQLLGKEFEMKDLGEAQKILGMEIARDRAAGVLTLSQEGYVKKVLRSSQMDQAKPVSTPLGIH FKLRAATEKEYQEQFDRMKIVPYSNTVGSIMYSMIGTRPDLAYPVGVISRYMSRPLKDHWQAAKWVLRYM KGTEKKKLCFRKNKDFLLRGYCDSDYGGDYDNRRSITGYVFTIGGNTISWKSRQQKVVAISTTEAEYMAL TDAVKEALWLRGFSEELGFAQESVEVNCDSESVIALAKNSVHHERTKHIDIRLHFIRDIINAGLVKVVKI ASECNPADIFTKVLPVEKFEGALHMLRVTEN
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
References:
|
|||