Repbase Reports |
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| 2001, Volume 1, Issue 1 |
| January 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 6 |
ATCOPIA47_I |
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Internal region of ATCOPIA47 copia-like LTR-retrotransposon. |
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Submitted: 31-Jan-2001 |
Accepted: 31-Jan-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; ATCOPIA47LTR; ATCOPIA47_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of ATCOPIA47 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(1) p.6 (2001) |
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Abstract: ATCOPIA47_I is an internal region of the ATCOPIA47 copia-like endogenous retrovirus flanked by 2% divergent ATCOPIA47LTR LTRs and 5 bp-long target-site duplication. ATCOPIA47_I encodes the 1430-aa ATCOPIA47p copia-like polyprotein. ATCOPIA47p: MANQSMELYSYPVLNISNCVTVKLTERNYLLWKTQFESFLSGQNLLGFVNGATKSPDPVSAVTNIDGVVT EIPNADYSARHRSDQVVKSWILGSLSEDILEEVITESTAQQVWEGLARYFNRVSTARLFELQRKQQTMCK HDTPMIDYIKGIKNICEQLASAGSPVKEQMKFFAALNGLGREYEPIKTSIEGSMESTPAPTLDSITPRLT GFADRLKSYEVVSVTPHLVFTADAPDAGNYYQTNYSGRGNFSGKGNRGRGAYNTKGRGFHQQTTTGSSMS GENRPVCQICGKLGHPALKCWHRFNNSYQHEELPSALTAMHITEVTEHNGQEWFPDTGASAHVTNSHQHL QQSRPYNGSDAVIVGNGEFLPITHTGSTNLSSTSGKLPLKDVLVCPDIAKPLLSVSKLTRDYPCSFEFDC DGVRVHDKGTKRLLILGTSKDGLYVLKNTPIQAFYSTRQQATSDEVWHMRLGHPNPQILQYLSKINAIKI NKSSKSMCEACQLGKSSRLPFSLSTSVTTKPLQRIHYDLWGPAPIVSGQGFKYYAIFIDNYSRFCWFYPL KLKSDFFTVFINFQALVENQFSTKIQSFQCDGGGEFTSNQFVNHLQASGIKQLISCPHTPQQNGLAERKH RHIIELGLSMMFQSRIPQKYWVKAFFTANFLSNLLPSSVLDAQKSPYEVLLGNAPDYTSLRTFGCACFPT LRDYTQNKFDPRSLQCVFLGYNEKYKGYRCLLPSTGRVYISRHVLFDEQVFPFATLNKEVTSNLQTPLMQ AWQKSFQVLPTTSPQPASPLFSETDFPPLPIRIPEQSTVRSEGRSGCTTGLDPASIGNSLSLIPQRMDSS ESTSTSSEIPELAIVTQPTEESTENPAASTTTSTQTESDTPATAQHPMVTRSKSGITKPNPRYALLTHKV SYPEPKTVTSALKDPGWNGAMTEEIGNCGEAETWSLTPRTPEMHVLGCKWVFRTKLNADVSLNKLRARLV AKGFNQEEGIDYLKTYSPVVRSATVRGVLHVATIMEWEIKQMDVKNAFMHGDLTETVYMTQPAGFVDPDK PNHVCHLHKSIYGLKQSPRAWFDKFSTFLLEFGFTCSYPDPSLFIYIKNKDVILLLLYVDDMVITGNNSK ALSNLLAELNKQFRMKDLGELHYFLGIQVQNHSEGLFLSQQKYAEDLLVVAAMSDCSPMPTPLPLQIHKE SDTDDAFPDPSYFRSLAGKLQYLTLTRPDIQFAVNFVCRKMHAPSQFDFSLLRRILRYIKGTITMGITFR KDTDCTLRAYSDSDFGGCKSTVRSTGGFCTFLGSNLISWSSQKQDSVSKSSTEAEYRAMSEAASEITWLC SFLKELGIPLHETPSLYCDNLSAVYLTANPAFHNRTKLFLRHYHYVRERVALGALIVKHIPSHHQIADIF TKSLPHGPFSSLRFKLGIDSPPIPSLRGSH
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Derived: Positions 190949 195248 Accession No AL161552 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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