Repbase Reports |
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| 2001, Volume 1, Issue 1 |
| January 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2 |
ATCOPIA45_I |
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Internal region of the ATCOPIA45 copia-like LTR-retrotransposon. |
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Submitted: 31-Jan-2001 |
Accepted: 31-Jan-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; ATCOPIA45LTR; ATCOPIA45_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal region of the ATCOPIA45 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(1) p.2 (2001) |
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Abstract: ATCOPIA45_I is an internal region of the ATCOPIA45 copia-like endogenous retrovirus flanked by 1% divergent ATCOPIA45LTR LTRs and 5 bp-long target-site duplication. ATCOPIA45_I encodes the 1367-aa ATCOPIA45p copia-like polyprotein (it is disrupted by two stop codons emerged after integration of ATCOPIA45 in the genome). ATCOPIA45p: MGDIVPVTNNTKEGSSSSSIQCPMLTATNYTFWTIRMTMALKVHKVWETIEEGLDDIDKNNMASALLLQS IPEALTLRVGKLKTAKKIWDAIKARNLGADRVKDARLQTLMGEFERIKMKETEKIDDFAGRLSELSTKSA DLGNDIEEPKLVKKFLNSLPRKRYIHIIAALEQVLDLNTTSFEDIVGRLKAYEERICDEEDNQDDQGKLL YANSEEKSAQNNWNPNKGKSQGGRGYGRGRGRDRFGNAQGNRDMTNVICYRCDKLGHYASDCPDRLLKLQ ETQDVKNDDTQKADALMMHEVVFLNEKNVMPNKLEASLDVDNVWYLDNGASNHMTGNLAYFGEIDERVTG KVRFGDDSRIDIKGKGSITFIAKNEERKILADVYYIPDLRSNIVSLGQATESGCDVRMRDDHLTLYDRDG KLLIKATRSRNRLYKVIMEVDDTKCLQLESLSETTKWHARLGHIGTDNLKRMMQKELVIGIPNIKVEKEM CGSCLLGKQARKPFPQATPYRATSILELLHGDLCGPITPSTVA*NRYIFVLIDDYSRYMWSLLLKEKSEA FNKFKSFKACVEQETGATIKTFRTDRGGEFVSQEFQAFCDASGIKRHLTAPYSPQQNGVVERRNRTLMEM TRSILKHMSVPNYLWGEAVRHSTYLINRVATRTLVDQTPYKVLKSKKPNVEHLRVFGCIGYAKAEAVHLR KLDDRSRMLVHLGTEPGSKGYRLLDPTRRKVIVSRDVVFDEEKRWKWNNSEDEINNVPGMFSLSFEEFGN NGIREEDDITEETEINDGENHDREAEIPTQAIETVEQ*VEPQVTLRKSVRVISKPSYLDDYVLLASIECE RLLLMINEEPWDYNEAKELQEWKKACVEEIASITKNHTWDLVDLPIGAKPIGLKWVFKLKRNSDGSVNKH KARLVAKGYVQRHGIDFDEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHGELKEVVYVSQPEGF VIGGSEDKVYKLNKALYGLKQAPRAWNNKLNKILMELKFTKCSKEPSLYCRRDKDELLVVVVYVDDLLVT GSNLQVILEFKEEMAKKFEMSDLGKLTYYLGIEVFQHEGGIMLKQERYANKILEETKMDDCNAVQIPMDA NLKLSKAQEEKNIDEKEYRRNIGCLRYLLHTRPDLSYCVGVLSRYMHEPKESHGAALKQILRYLRGTQSF GLCFKRMNKTELVGFSDSSHNVDEDDGRSTTGHIFYLNDCPITWCSQKQETVALSSCEAEFMAATEAAKQ AVWLQELLEEIVGKTCKQVLILIDNKSAIALTKNPVFHGRSKHIHKRYHFIRECVANEQVEVEHVPGTEQ RADILTKALGRIKFKEMRDLVGVQDMTKCSFKLKGEH
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Derived: Positions 14885 19095 Accession No AL161592 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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