Repbase Reports |
|---|
| 2005, Volume 5, Issue 4 |
| April 30, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 96 |
SINE2-2_SP |
|||
|---|---|---|---|
A family of SINE retrotransposons - a consensus sequence. |
|||
|
Submitted: 30-Apr-2005 |
Accepted: 30-Apr-2005 |
||
|
Key Words: SINE2; SINE; Interspersed Repeat; Non-autonomous; non-LTR retrotransposon; SINE2-2_SP |
|||
|
Source: Strongylocentrotus purpuratus |
Organism: Strongylocentrotus purpuratus |
Taxonomy: Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: SINE2-2_SP, a family of SINE2 retrotransposons in the sea urchin genome. |
|||
|
Journal: Repbase Reports 5(4), 96-96 (2005) |
|||
Abstract: The genome harbors ~2000 copies of SINE2-2_SP elements.The consensus sequence represents a major young family of SINE2-2_SP elements (they are >95% identical to the consensus sequence). The 70-bp 5' terminus was derived from a Lys tRNA pol III region. The 131-bp 5' terminal portions of SINE2-2_SP and SINE2-1_SP are 77% identical to each other. The autonomous non-LTR retrotransposon involved in proliferation of SINE2-2_SP is not known yet. Given the lack of target site duplications and 3' microsatellites in SINE2-2_SP, the unknown autonomous element is expected to be a member of the CR1 clade.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||